PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g089210.1
Common NameMTR_7g089210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 89aa    MW: 10065.3 Da    PI: 8.8454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g089210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081055245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+W+  E + + +a + + ++   +W  +a+ +g g+t++++k ++ 
  Medtr7g089210.1 10 GSWSVKENKAFERALAVYDKDtpdRWYNVAHAVG-GKTPEEVKKHYE 55
                     89********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-13562IPR009057Homeodomain-like
PROSITE profilePS5129310.815762IPR017884SANT domain
SMARTSM007171.1E-8860IPR001005SANT/Myb domain
PfamPF002494.6E-71055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-51164IPR009057Homeodomain-like
CDDcd001672.46E-41658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASSSMSASG SWSVKENKAF ERALAVYDKD TPDRWYNVAH AVGGKTPEEV KKHYELLVED  60
IKHIESGKVP FPNYKKISVS HEEKRYHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-40188189RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1575021e-147AC157502.2 Medicago truncatula chromosome 7 clone mte1-56e23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624937.11e-59MYB family transcription factor
SwissprotQ58FS31e-40RAD_ANTMA; Transcription factor RADIALIS
TrEMBLG7L5W01e-59G7L5W0_MEDTR; MYB family transcription factor
STRINGGLYMA02G18210.17e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-33RAD-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]